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Assign Mental Health cohort

Source: R/create_demographic_lookup.R
assign_demographic_cohorts.Rd

A record is considered to be in the MH cohort if the recid is 04B. Also, if the recid is one of 01B, GLS, 50B, 02B or AE2 and any of the diagnosis codes start with F2, F3, F067, F070, F072, F078, or F079.

A record is considered to be in the frailty cohort if:

  • The recid is 01B, 50B, 02B, 04B or AE2 and

    1. One of the diagnosis codes starts with W0 or W1

    2. One of the diagnosis codes starts with F00, F01, F02, F03, F05, I61, I63, I64, G20 or G21

    3. One of the diagnosis codes starts with R268 or G22X

    4. The specialty is AB

    5. The significant facility is 1E or 1D

    6. The recid is GLS

A record is considered to be in the Maternity cohort if the recid is 02B

A record is considered to be in the High Complex Conditions cohort if the patient has any of the listed LTCs, or the specialty is G5

A record is considered to be in the Medium Complex Conditions cohort if the patient has any of the listed LTCs

A record is considered to be in the Low Complex Conditions cohort if the patient has any of the listed LTCs.

Not using this cohort until we have more datasets and Scotland complete DN etc. so will always return FALSE.

A person is considered to be in this cohort if their age is over 18 and the recid is 01B, or their prescribing cost is £500 or over

A person is considered to be in this cohort if their age is under 18 and the recid is 01B, or their prescribing cost is £500 or over

A record is considered to be in the EoL cohort if it is an NRS death record and the cause of death is not external. The exception to this is if the cause of death is external and is classified as a fall

Please see technical documentation for full description of the Substance Misuse cohort

Usage

assign_d_cohort_mh(recid, diag1, diag2, diag3, diag4, diag5, diag6)

assign_d_cohort_frailty(
  recid,
  diag1,
  diag2,
  diag3,
  diag4,
  diag5,
  diag6,
  spec,
  sigfac
)

assign_d_cohort_maternity(recid)

assign_d_cohort_high_cc(dementia, hefailure, refailure, liver, cancer, spec)

assign_d_cohort_medium_cc(cvd, copd, chd, parkinsons, ms)

assign_d_cohort_low_cc(epilepsy, asthma, arth, diabetes, atrialfib)

assign_d_cohort_comm_living()

assign_d_cohort_adult_major(recid, age, cost_total_net)

assign_d_cohort_child_major(recid, age, cost_total_net)

assign_d_cohort_eol(
  recid,
  deathdiag1,
  deathdiag2,
  deathdiag3,
  deathdiag4,
  deathdiag5,
  deathdiag6,
  deathdiag7,
  deathdiag8,
  deathdiag9,
  deathdiag10,
  deathdiag11
)

assign_d_cohort_substance(data)

Arguments

recid

A vector of recids

diag1, diag2, diag3, diag4, diag5, diag6

Character vectors of ICD-10 diagnosis codes.

spec

A vector of specialties

sigfac

A vector of significant facilities

dementia

A vector of dementia LTC flags

hefailure

A vector of heart failure LTC flags

refailure

A vector of renal failure LTC flags

liver

A vector of liver disease LTC flags

cancer

A vector of cancer LTC flags

cvd

A vector of CVD LTC flags

copd

A vector of COPD LTC flags

chd

A vector of CHD LTC flags

parkinsons

A vector of Parkinson's LTC flags

ms

A vector of MS LTC flags

epilepsy

A vector of epilepsy LTC flags

asthma

A vector of asthma LTC flags

arth

A vector of arthritis LTC flags

diabetes

A vector of diabetes LTC flags

atrialfib

A vector of atrial fibrillation LTC flags

age

A vector of ages

cost_total_net

A vector of total net costs

deathdiag1, deathdiag2, deathdiag3, deathdiag4, deathdiag5, deathdiag6, deathdiag7, deathdiag8, deathdiag9, deathdiag10, deathdiag11

Character vectors of ICD-10 death diagnosis codes.

data

A data frame containing at least recid`` and the six diagnosis codes (diag:diag6`)

Value

A boolean vector indicating whether a record is in the particular demographic cohort.

A data frame with an additional boolean variable, substance, indicating a record is in the substance misuse cohort.

See also

Other Demographic and Service Use Cohort functions: add_operation_flag(), assign_cohort_names(), assign_death_flag(), assign_elective_daycase_instances(), assign_elective_inpatient_flag(), assign_elective_inpatient_instances(), assign_elective_instances(), assign_emergency_instances(), assign_s_cohort_ae2(), assign_s_cohort_community_care(), assign_s_cohort_elective_inpatient(), assign_s_cohort_geriatric(), assign_s_cohort_limited_daycases(), assign_s_cohort_maternity(), assign_s_cohort_multiple_emergency(), assign_s_cohort_outpatient(), assign_s_cohort_prescribing(), assign_s_cohort_psychiatry(), assign_s_cohort_residential_care(), assign_s_cohort_routine_daycase(), assign_s_cohort_single_emergency(), calculate_acute_elective_cost(), calculate_acute_emergency_cost(), calculate_ae2_cost(), calculate_care_home_cost(), calculate_community_care_cost(), calculate_community_health_cost(), calculate_elective_inpatient_cost(), calculate_geriatric_cost(), calculate_home_care_cost(), calculate_hospital_elective_cost(), calculate_hospital_emergency_cost(), calculate_limited_daycases_cost(), calculate_maternity_cost(), calculate_multiple_emergency_cost(), calculate_outpatient_costs(), calculate_prescribing_cost(), calculate_psychiatry_cost(), calculate_residential_care_cost(), calculate_routine_daycase_cost(), calculate_single_emergency_cost(), create_demographic_cohorts(), create_service_use_cohorts(), recalculate_elective_inpatient_cost()

Other Demographic and Service Use Cohort functions: add_operation_flag(), assign_cohort_names(), assign_death_flag(), assign_elective_daycase_instances(), assign_elective_inpatient_flag(), assign_elective_inpatient_instances(), assign_elective_instances(), assign_emergency_instances(), assign_s_cohort_ae2(), assign_s_cohort_community_care(), assign_s_cohort_elective_inpatient(), assign_s_cohort_geriatric(), assign_s_cohort_limited_daycases(), assign_s_cohort_maternity(), assign_s_cohort_multiple_emergency(), assign_s_cohort_outpatient(), assign_s_cohort_prescribing(), assign_s_cohort_psychiatry(), assign_s_cohort_residential_care(), assign_s_cohort_routine_daycase(), assign_s_cohort_single_emergency(), calculate_acute_elective_cost(), calculate_acute_emergency_cost(), calculate_ae2_cost(), calculate_care_home_cost(), calculate_community_care_cost(), calculate_community_health_cost(), calculate_elective_inpatient_cost(), calculate_geriatric_cost(), calculate_home_care_cost(), calculate_hospital_elective_cost(), calculate_hospital_emergency_cost(), calculate_limited_daycases_cost(), calculate_maternity_cost(), calculate_multiple_emergency_cost(), calculate_outpatient_costs(), calculate_prescribing_cost(), calculate_psychiatry_cost(), calculate_residential_care_cost(), calculate_routine_daycase_cost(), calculate_single_emergency_cost(), create_demographic_cohorts(), create_service_use_cohorts(), recalculate_elective_inpatient_cost()

Other Demographic and Service Use Cohort functions: add_operation_flag(), assign_cohort_names(), assign_death_flag(), assign_elective_daycase_instances(), assign_elective_inpatient_flag(), assign_elective_inpatient_instances(), assign_elective_instances(), assign_emergency_instances(), assign_s_cohort_ae2(), assign_s_cohort_community_care(), assign_s_cohort_elective_inpatient(), assign_s_cohort_geriatric(), assign_s_cohort_limited_daycases(), assign_s_cohort_maternity(), assign_s_cohort_multiple_emergency(), assign_s_cohort_outpatient(), assign_s_cohort_prescribing(), assign_s_cohort_psychiatry(), assign_s_cohort_residential_care(), assign_s_cohort_routine_daycase(), assign_s_cohort_single_emergency(), calculate_acute_elective_cost(), calculate_acute_emergency_cost(), calculate_ae2_cost(), calculate_care_home_cost(), calculate_community_care_cost(), calculate_community_health_cost(), calculate_elective_inpatient_cost(), calculate_geriatric_cost(), calculate_home_care_cost(), calculate_hospital_elective_cost(), calculate_hospital_emergency_cost(), calculate_limited_daycases_cost(), calculate_maternity_cost(), calculate_multiple_emergency_cost(), calculate_outpatient_costs(), calculate_prescribing_cost(), calculate_psychiatry_cost(), calculate_residential_care_cost(), calculate_routine_daycase_cost(), calculate_single_emergency_cost(), create_demographic_cohorts(), create_service_use_cohorts(), recalculate_elective_inpatient_cost()

Other Demographic and Service Use Cohort functions: add_operation_flag(), assign_cohort_names(), assign_death_flag(), assign_elective_daycase_instances(), assign_elective_inpatient_flag(), assign_elective_inpatient_instances(), assign_elective_instances(), assign_emergency_instances(), assign_s_cohort_ae2(), assign_s_cohort_community_care(), assign_s_cohort_elective_inpatient(), assign_s_cohort_geriatric(), assign_s_cohort_limited_daycases(), assign_s_cohort_maternity(), assign_s_cohort_multiple_emergency(), assign_s_cohort_outpatient(), assign_s_cohort_prescribing(), assign_s_cohort_psychiatry(), assign_s_cohort_residential_care(), assign_s_cohort_routine_daycase(), assign_s_cohort_single_emergency(), calculate_acute_elective_cost(), calculate_acute_emergency_cost(), calculate_ae2_cost(), calculate_care_home_cost(), calculate_community_care_cost(), calculate_community_health_cost(), calculate_elective_inpatient_cost(), calculate_geriatric_cost(), calculate_home_care_cost(), calculate_hospital_elective_cost(), calculate_hospital_emergency_cost(), calculate_limited_daycases_cost(), calculate_maternity_cost(), calculate_multiple_emergency_cost(), calculate_outpatient_costs(), calculate_prescribing_cost(), calculate_psychiatry_cost(), calculate_residential_care_cost(), calculate_routine_daycase_cost(), calculate_single_emergency_cost(), create_demographic_cohorts(), create_service_use_cohorts(), recalculate_elective_inpatient_cost()

Other Demographic and Service Use Cohort functions: add_operation_flag(), assign_cohort_names(), assign_death_flag(), assign_elective_daycase_instances(), assign_elective_inpatient_flag(), assign_elective_inpatient_instances(), assign_elective_instances(), assign_emergency_instances(), assign_s_cohort_ae2(), assign_s_cohort_community_care(), assign_s_cohort_elective_inpatient(), assign_s_cohort_geriatric(), assign_s_cohort_limited_daycases(), assign_s_cohort_maternity(), assign_s_cohort_multiple_emergency(), assign_s_cohort_outpatient(), assign_s_cohort_prescribing(), assign_s_cohort_psychiatry(), assign_s_cohort_residential_care(), assign_s_cohort_routine_daycase(), assign_s_cohort_single_emergency(), calculate_acute_elective_cost(), calculate_acute_emergency_cost(), calculate_ae2_cost(), calculate_care_home_cost(), calculate_community_care_cost(), calculate_community_health_cost(), calculate_elective_inpatient_cost(), calculate_geriatric_cost(), calculate_home_care_cost(), calculate_hospital_elective_cost(), calculate_hospital_emergency_cost(), calculate_limited_daycases_cost(), calculate_maternity_cost(), calculate_multiple_emergency_cost(), calculate_outpatient_costs(), calculate_prescribing_cost(), calculate_psychiatry_cost(), calculate_residential_care_cost(), calculate_routine_daycase_cost(), calculate_single_emergency_cost(), create_demographic_cohorts(), create_service_use_cohorts(), recalculate_elective_inpatient_cost()

Other Demographic and Service Use Cohort functions: add_operation_flag(), assign_cohort_names(), assign_death_flag(), assign_elective_daycase_instances(), assign_elective_inpatient_flag(), assign_elective_inpatient_instances(), assign_elective_instances(), assign_emergency_instances(), assign_s_cohort_ae2(), assign_s_cohort_community_care(), assign_s_cohort_elective_inpatient(), assign_s_cohort_geriatric(), assign_s_cohort_limited_daycases(), assign_s_cohort_maternity(), assign_s_cohort_multiple_emergency(), assign_s_cohort_outpatient(), assign_s_cohort_prescribing(), assign_s_cohort_psychiatry(), assign_s_cohort_residential_care(), assign_s_cohort_routine_daycase(), assign_s_cohort_single_emergency(), calculate_acute_elective_cost(), calculate_acute_emergency_cost(), calculate_ae2_cost(), calculate_care_home_cost(), calculate_community_care_cost(), calculate_community_health_cost(), calculate_elective_inpatient_cost(), calculate_geriatric_cost(), calculate_home_care_cost(), calculate_hospital_elective_cost(), calculate_hospital_emergency_cost(), calculate_limited_daycases_cost(), calculate_maternity_cost(), calculate_multiple_emergency_cost(), calculate_outpatient_costs(), calculate_prescribing_cost(), calculate_psychiatry_cost(), calculate_residential_care_cost(), calculate_routine_daycase_cost(), calculate_single_emergency_cost(), create_demographic_cohorts(), create_service_use_cohorts(), recalculate_elective_inpatient_cost()

Other Demographic and Service Use Cohort functions: add_operation_flag(), assign_cohort_names(), assign_death_flag(), assign_elective_daycase_instances(), assign_elective_inpatient_flag(), assign_elective_inpatient_instances(), assign_elective_instances(), assign_emergency_instances(), assign_s_cohort_ae2(), assign_s_cohort_community_care(), assign_s_cohort_elective_inpatient(), assign_s_cohort_geriatric(), assign_s_cohort_limited_daycases(), assign_s_cohort_maternity(), assign_s_cohort_multiple_emergency(), assign_s_cohort_outpatient(), assign_s_cohort_prescribing(), assign_s_cohort_psychiatry(), assign_s_cohort_residential_care(), assign_s_cohort_routine_daycase(), assign_s_cohort_single_emergency(), calculate_acute_elective_cost(), calculate_acute_emergency_cost(), calculate_ae2_cost(), calculate_care_home_cost(), calculate_community_care_cost(), calculate_community_health_cost(), calculate_elective_inpatient_cost(), calculate_geriatric_cost(), calculate_home_care_cost(), calculate_hospital_elective_cost(), calculate_hospital_emergency_cost(), calculate_limited_daycases_cost(), calculate_maternity_cost(), calculate_multiple_emergency_cost(), calculate_outpatient_costs(), calculate_prescribing_cost(), calculate_psychiatry_cost(), calculate_residential_care_cost(), calculate_routine_daycase_cost(), calculate_single_emergency_cost(), create_demographic_cohorts(), create_service_use_cohorts(), recalculate_elective_inpatient_cost()

Other Demographic and Service Use Cohort functions: add_operation_flag(), assign_cohort_names(), assign_death_flag(), assign_elective_daycase_instances(), assign_elective_inpatient_flag(), assign_elective_inpatient_instances(), assign_elective_instances(), assign_emergency_instances(), assign_s_cohort_ae2(), assign_s_cohort_community_care(), assign_s_cohort_elective_inpatient(), assign_s_cohort_geriatric(), assign_s_cohort_limited_daycases(), assign_s_cohort_maternity(), assign_s_cohort_multiple_emergency(), assign_s_cohort_outpatient(), assign_s_cohort_prescribing(), assign_s_cohort_psychiatry(), assign_s_cohort_residential_care(), assign_s_cohort_routine_daycase(), assign_s_cohort_single_emergency(), calculate_acute_elective_cost(), calculate_acute_emergency_cost(), calculate_ae2_cost(), calculate_care_home_cost(), calculate_community_care_cost(), calculate_community_health_cost(), calculate_elective_inpatient_cost(), calculate_geriatric_cost(), calculate_home_care_cost(), calculate_hospital_elective_cost(), calculate_hospital_emergency_cost(), calculate_limited_daycases_cost(), calculate_maternity_cost(), calculate_multiple_emergency_cost(), calculate_outpatient_costs(), calculate_prescribing_cost(), calculate_psychiatry_cost(), calculate_residential_care_cost(), calculate_routine_daycase_cost(), calculate_single_emergency_cost(), create_demographic_cohorts(), create_service_use_cohorts(), recalculate_elective_inpatient_cost()

Other Demographic and Service Use Cohort functions: add_operation_flag(), assign_cohort_names(), assign_death_flag(), assign_elective_daycase_instances(), assign_elective_inpatient_flag(), assign_elective_inpatient_instances(), assign_elective_instances(), assign_emergency_instances(), assign_s_cohort_ae2(), assign_s_cohort_community_care(), assign_s_cohort_elective_inpatient(), assign_s_cohort_geriatric(), assign_s_cohort_limited_daycases(), assign_s_cohort_maternity(), assign_s_cohort_multiple_emergency(), assign_s_cohort_outpatient(), assign_s_cohort_prescribing(), assign_s_cohort_psychiatry(), assign_s_cohort_residential_care(), assign_s_cohort_routine_daycase(), assign_s_cohort_single_emergency(), calculate_acute_elective_cost(), calculate_acute_emergency_cost(), calculate_ae2_cost(), calculate_care_home_cost(), calculate_community_care_cost(), calculate_community_health_cost(), calculate_elective_inpatient_cost(), calculate_geriatric_cost(), calculate_home_care_cost(), calculate_hospital_elective_cost(), calculate_hospital_emergency_cost(), calculate_limited_daycases_cost(), calculate_maternity_cost(), calculate_multiple_emergency_cost(), calculate_outpatient_costs(), calculate_prescribing_cost(), calculate_psychiatry_cost(), calculate_residential_care_cost(), calculate_routine_daycase_cost(), calculate_single_emergency_cost(), create_demographic_cohorts(), create_service_use_cohorts(), recalculate_elective_inpatient_cost()

Other Demographic and Service Use Cohort functions: add_operation_flag(), assign_cohort_names(), assign_death_flag(), assign_elective_daycase_instances(), assign_elective_inpatient_flag(), assign_elective_inpatient_instances(), assign_elective_instances(), assign_emergency_instances(), assign_s_cohort_ae2(), assign_s_cohort_community_care(), assign_s_cohort_elective_inpatient(), assign_s_cohort_geriatric(), assign_s_cohort_limited_daycases(), assign_s_cohort_maternity(), assign_s_cohort_multiple_emergency(), assign_s_cohort_outpatient(), assign_s_cohort_prescribing(), assign_s_cohort_psychiatry(), assign_s_cohort_residential_care(), assign_s_cohort_routine_daycase(), assign_s_cohort_single_emergency(), calculate_acute_elective_cost(), calculate_acute_emergency_cost(), calculate_ae2_cost(), calculate_care_home_cost(), calculate_community_care_cost(), calculate_community_health_cost(), calculate_elective_inpatient_cost(), calculate_geriatric_cost(), calculate_home_care_cost(), calculate_hospital_elective_cost(), calculate_hospital_emergency_cost(), calculate_limited_daycases_cost(), calculate_maternity_cost(), calculate_multiple_emergency_cost(), calculate_outpatient_costs(), calculate_prescribing_cost(), calculate_psychiatry_cost(), calculate_residential_care_cost(), calculate_routine_daycase_cost(), calculate_single_emergency_cost(), create_demographic_cohorts(), create_service_use_cohorts(), recalculate_elective_inpatient_cost()

Other Demographic and Service Use Cohort functions: add_operation_flag(), assign_cohort_names(), assign_death_flag(), assign_elective_daycase_instances(), assign_elective_inpatient_flag(), assign_elective_inpatient_instances(), assign_elective_instances(), assign_emergency_instances(), assign_s_cohort_ae2(), assign_s_cohort_community_care(), assign_s_cohort_elective_inpatient(), assign_s_cohort_geriatric(), assign_s_cohort_limited_daycases(), assign_s_cohort_maternity(), assign_s_cohort_multiple_emergency(), assign_s_cohort_outpatient(), assign_s_cohort_prescribing(), assign_s_cohort_psychiatry(), assign_s_cohort_residential_care(), assign_s_cohort_routine_daycase(), assign_s_cohort_single_emergency(), calculate_acute_elective_cost(), calculate_acute_emergency_cost(), calculate_ae2_cost(), calculate_care_home_cost(), calculate_community_care_cost(), calculate_community_health_cost(), calculate_elective_inpatient_cost(), calculate_geriatric_cost(), calculate_home_care_cost(), calculate_hospital_elective_cost(), calculate_hospital_emergency_cost(), calculate_limited_daycases_cost(), calculate_maternity_cost(), calculate_multiple_emergency_cost(), calculate_outpatient_costs(), calculate_prescribing_cost(), calculate_psychiatry_cost(), calculate_residential_care_cost(), calculate_routine_daycase_cost(), calculate_single_emergency_cost(), create_demographic_cohorts(), create_service_use_cohorts(), recalculate_elective_inpatient_cost()